Index

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__annotations__ (genomcore.controllers.email.EmailController attribute) (genomcore.controllers.files.FilesController attribute) (genomcore.controllers.forms.FormController attribute) (genomcore.controllers.history.HistoryController attribute) (genomcore.controllers.omics_files.OmicsFilesController attribute) (genomcore.controllers.records.RecordsController attribute) (genomcore.controllers.task.TaskController attribute) (genomcore.controllers.templates.TemplatesController attribute) (genomcore.controllers.time_series.TimeSeriesController attribute) (genomcore.controllers.variants.VariantsController attribute) (genomcore.controllers.variantsBatch.VariantsBatchController attribute) __firstlineno__ (genomcore.controllers.auth.AuthController attribute) (genomcore.controllers.email.EmailController attribute) (genomcore.controllers.events.EventsController attribute) (genomcore.controllers.files.FilesController attribute) (genomcore.controllers.forms.FormController attribute) (genomcore.controllers.history.HistoryController attribute) (genomcore.controllers.omics_files.OmicsFilesController attribute) (genomcore.controllers.records.RecordsController attribute) (genomcore.controllers.task.Task attribute) (genomcore.controllers.task.TaskController attribute) (genomcore.controllers.templates.TemplatesController attribute) (genomcore.controllers.time_series.TimeSeriesController attribute) (genomcore.controllers.variants.VariantsController attribute) (genomcore.controllers.variantsBatch.VariantsBatchController attribute)

__static_attributes__ (genomcore.controllers.auth.AuthController attribute) (genomcore.controllers.email.EmailController attribute) (genomcore.controllers.events.EventsController attribute) (genomcore.controllers.files.FilesController attribute) (genomcore.controllers.forms.FormController attribute) (genomcore.controllers.history.HistoryController attribute) (genomcore.controllers.omics_files.OmicsFilesController attribute) (genomcore.controllers.records.RecordsController attribute) (genomcore.controllers.task.Task attribute) (genomcore.controllers.task.TaskController attribute) (genomcore.controllers.templates.TemplatesController attribute) (genomcore.controllers.time_series.TimeSeriesController attribute) (genomcore.controllers.variants.VariantsController attribute) (genomcore.controllers.variantsBatch.VariantsBatchController attribute) _check_extensions() (genomcore.controllers.files.FilesController method) _check_filetypes() (genomcore.controllers.files.FilesController method) _check_if_exists() (genomcore.controllers.files.FilesController method) _format_extensions() (genomcore.controllers.files.FilesController static method) _get_local_and_remote_paths() (genomcore.controllers.files.FilesController static method) _idactor (genomcore.controllers.files.FilesController attribute) _idproject (genomcore.controllers.files.FilesController attribute) _is_valid_extension() (genomcore.controllers.files.FilesController method) _validate_reserved_params() (genomcore.controllers.task.Task method)

A

all() (genomcore.controllers.files.FilesController method) app_name (genomcore.controllers.task.Task property)

app_version (genomcore.controllers.task.Task property) assing() (genomcore.controllers.forms.FormController method) AuthController (class in genomcore.controllers.auth)

B

BatchsId (genomcore.controllers.variantsBatch.VariantsBatchController property)

bearer (genomcore.controllers.auth.AuthController property)

C

COMPLETE (genomcore.controllers.variantsBatch.VariantsBatchController attribute) COMPLETED (genomcore.controllers.omics_files.OmicsFilesController attribute) copy_to_omics_bucket() (genomcore.controllers.omics_files.OmicsFilesController method) count() (genomcore.controllers.variants.VariantsController method) create_events() (genomcore.controllers.events.EventsController method) create_folder() (genomcore.controllers.files.FilesController method)

create_observations() (genomcore.controllers.variants.VariantsController method) create_observations_batch() (genomcore.controllers.variantsBatch.VariantsBatchController method) create_one_observations_batch() (genomcore.controllers.variantsBatch.VariantsBatchController method) create_records() (genomcore.controllers.records.RecordsController method) create_template() (genomcore.controllers.templates.TemplatesController method) create_time_series() (genomcore.controllers.time_series.TimeSeriesController method)

D

decode_jwt() (genomcore.controllers.auth.AuthController method) decoded_token (genomcore.controllers.auth.AuthController property) delete() (genomcore.controllers.files.FilesController method) delete_events() (genomcore.controllers.events.EventsController method) delete_observations() (genomcore.controllers.variants.VariantsController method)

delete_records() (genomcore.controllers.records.RecordsController method) delete_template() (genomcore.controllers.templates.TemplatesController method) delete_time_series() (genomcore.controllers.time_series.TimeSeriesController method) download() (genomcore.controllers.files.FilesController method) download_multiple() (genomcore.controllers.files.FilesController method)

E

EmailController (class in genomcore.controllers.email) env (genomcore.controllers.auth.AuthController property)

errors (genomcore.controllers.variantsBatch.VariantsBatchController property) EventsController (class in genomcore.controllers.events)

F

FAILED (genomcore.controllers.omics_files.OmicsFilesController attribute) (genomcore.controllers.variantsBatch.VariantsBatchController attribute) FilesController (class in genomcore.controllers.files)

filter() (genomcore.controllers.files.FilesController method) filter_kube() (genomcore.controllers.files.FilesController method) FormController (class in genomcore.controllers.forms)

G

genomcore.controllers.auth module genomcore.controllers.email module genomcore.controllers.events module genomcore.controllers.files module genomcore.controllers.forms module genomcore.controllers.history module genomcore.controllers.omics_files module genomcore.controllers.records module genomcore.controllers.task module genomcore.controllers.templates module

genomcore.controllers.time_series module genomcore.controllers.variants module genomcore.controllers.variantsBatch module get() (genomcore.controllers.files.FilesController method) (genomcore.controllers.templates.TemplatesController method) get_copy_omics_status() (genomcore.controllers.omics_files.OmicsFilesController method) get_errors (genomcore.controllers.variantsBatch.VariantsBatchController property) get_metadata() (genomcore.controllers.files.FilesController method) get_project_id() (genomcore.controllers.auth.AuthController method) get_public_url() (genomcore.controllers.files.FilesController method) get_records() (genomcore.controllers.records.RecordsController method) get_reserved_parameters() (genomcore.controllers.task.Task method) get_status() (genomcore.controllers.variantsBatch.VariantsBatchController method) get_task_children() (genomcore.controllers.task.TaskController method) get_template() (genomcore.controllers.variants.VariantsController method)

H

HistoryController (class in genomcore.controllers.history)

host (genomcore.controllers.auth.AuthController property)

I

idtask (genomcore.controllers.task.Task property) idversion (genomcore.controllers.task.Task property)

is_alive() (genomcore.controllers.files.FilesController method) (genomcore.controllers.variants.VariantsController method) is_dir() (genomcore.controllers.files.FilesController method)

L

login() (genomcore.controllers.auth.AuthController class method)

M

MODE_GENERIC (genomcore.controllers.email.EmailController attribute) module genomcore.controllers.auth genomcore.controllers.email genomcore.controllers.events genomcore.controllers.files genomcore.controllers.forms genomcore.controllers.history genomcore.controllers.omics_files genomcore.controllers.records genomcore.controllers.task genomcore.controllers.templates genomcore.controllers.time_series genomcore.controllers.variants genomcore.controllers.variantsBatch

move() (genomcore.controllers.files.FilesController method)

O

OmicsFilesController (class in genomcore.controllers.omics_files)

P

parameters (genomcore.controllers.task.Task property) PENDING (genomcore.controllers.omics_files.OmicsFilesController attribute) (genomcore.controllers.variantsBatch.VariantsBatchController attribute)

PROCESSING (genomcore.controllers.omics_files.OmicsFilesController attribute)

Q

query() (genomcore.controllers.history.HistoryController method) query_events() (genomcore.controllers.events.EventsController method)

query_observations() (genomcore.controllers.variants.VariantsController method) query_records() (genomcore.controllers.records.RecordsController method) query_time_series() (genomcore.controllers.time_series.TimeSeriesController method)

R

RecordsController (class in genomcore.controllers.records) refresh() (genomcore.controllers.auth.AuthController method) refresh_token (genomcore.controllers.auth.AuthController property)

reserved_parameters (genomcore.controllers.task.Task property) run_child_task() (genomcore.controllers.task.TaskController method) run_workflow() (genomcore.controllers.task.TaskController method)

S

send() (genomcore.controllers.email.EmailController method) send_genomcore() (genomcore.controllers.email.EmailController method)

set_reserved_parameter() (genomcore.controllers.task.Task method) set_reserved_parameters() (genomcore.controllers.task.Task method) status (genomcore.controllers.variantsBatch.VariantsBatchController property)

T

Task (class in genomcore.controllers.task) TaskController (class in genomcore.controllers.task) TemplatesController (class in genomcore.controllers.templates) TimeSeriesController (class in genomcore.controllers.time_series) to_dict (genomcore.controllers.task.Task property) to_json() (genomcore.controllers.auth.AuthController method) token (genomcore.controllers.auth.AuthController property) token_type (genomcore.controllers.auth.AuthController property) total (genomcore.controllers.variantsBatch.VariantsBatchController property)

TPL_DEFAULT (genomcore.controllers.email.EmailController attribute) TPL_EXISTENT_CUSTOMER (genomcore.controllers.email.EmailController attribute) TPL_EXISTENT_CUSTOMER_BASE (genomcore.controllers.email.EmailController attribute) TPL_LOGISTIC_SERVICE (genomcore.controllers.email.EmailController attribute) TPL_NEW_CUSTOMER_BASE (genomcore.controllers.email.EmailController attribute) TPL_PARTNER_CUSTOMER (genomcore.controllers.email.EmailController attribute) TPL_PRE_ORDER (genomcore.controllers.email.EmailController attribute) TPL_RESET_PASSWORD (genomcore.controllers.email.EmailController attribute) TPLS (genomcore.controllers.email.EmailController attribute)

U

unfold() (genomcore.controllers.files.FilesController method) unlock_file() (genomcore.controllers.files.FilesController method) update_multiple_records() (genomcore.controllers.records.RecordsController method) update_records() (genomcore.controllers.records.RecordsController method)

update_template() (genomcore.controllers.templates.TemplatesController method) upload() (genomcore.controllers.files.FilesController method) upload_dir() (genomcore.controllers.files.FilesController method) upload_multiple() (genomcore.controllers.files.FilesController method)

V

VariantsBatchController (class in genomcore.controllers.variantsBatch)

VariantsController (class in genomcore.controllers.variants)

W

wait() (genomcore.controllers.variantsBatch.VariantsBatchController method)